fetch-abstract-to-kb

Included with Lifetime

$97 forever

Fetch DOI candidates from PostgreSQL `journals` and batch write `abstract` by DOI. Use when you need DB-only backfill workflow: (1) select newest rows where doi is not empty, author is not empty, and abstract is empty (default limit 10), then (2) write prepared abstract values back in batch by DOI.

Generalscripts

What this skill does


# Fetch Abstract to KB

## Core Goal
- Provide only two DB operations:
  1. Fetch DOI candidates from `journals`.
  2. Batch update `abstract` by DOI.

## Required Environment
- `KB_DB_HOST`
- `KB_DB_PORT`
- `KB_DB_NAME`
- `KB_DB_USER`
- `KB_DB_PASSWORD`

## Workflow
1. Fetch DOI list (default 10 rows):

```bash
python3 scripts/fetch_abstract_to_kb.py fetch-doi
```

2. Optionally override row limit:

```bash
python3 scripts/fetch_abstract_to_kb.py fetch-doi --limit 10
```

3. Prepare JSON input for batch update (one of the two formats):

```json
[
  {"doi": "10.1000/a", "abstract": "text A"},
  {"doi": "10.1000/b", "abstract": "text B"}
]
```

or

```json
{
  "10.1000/a": "text A",
  "10.1000/b": "text B"
}
```

4. Batch write abstract by DOI:

```bash
python3 scripts/fetch_abstract_to_kb.py write-abstracts --input abstracts.json
```

## Query/Write Contract
- Fetch filter:
  - `doi` not empty
  - `author` not empty (fall back to `authors` when `author` is unavailable)
  - `abstract` empty (`NULL` or blank)
- Fetch order:
  - `ORDER BY created_at DESC NULLS LAST`
- Fetch default limit:
  - `10`
- Write guard:
  - Update only when target row `abstract` is still empty.

## Script
- `scripts/fetch_abstract_to_kb.py`

Files: 3

Size: 12.2 KB

Complexity: 35/100

Category: General

Source: https://github.com/tiangong-ai/skills/tree/main/fetch-abstract-to-kb

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