ocr-and-documents
Extract text from PDFs/scans (pymupdf, marker-pdf).
What this skill does
# PDF & Document Extraction
For DOCX: use `python-docx` (parses actual document structure, far better than OCR).
For PPTX: see the `powerpoint` skill (uses `python-pptx` with full slide/notes support).
This skill covers **PDFs and scanned documents**.
## Step 1: Remote URL Available?
If the document has a URL, **always try `web_extract` first**:
```
web_extract(urls=["https://arxiv.org/pdf/2402.03300"])
web_extract(urls=["https://example.com/report.pdf"])
```
This handles PDF-to-markdown conversion via Firecrawl with no local dependencies.
Only use local extraction when: the file is local, web_extract fails, or you need batch processing.
## Step 2: Choose Local Extractor
| Feature | pymupdf (~25MB) | marker-pdf (~3-5GB) |
|---------|-----------------|---------------------|
| **Text-based PDF** | ✅ | ✅ |
| **Scanned PDF (OCR)** | ❌ | ✅ (90+ languages) |
| **Tables** | ✅ (basic) | ✅ (high accuracy) |
| **Equations / LaTeX** | ❌ | ✅ |
| **Code blocks** | ❌ | ✅ |
| **Forms** | ❌ | ✅ |
| **Headers/footers removal** | ❌ | ✅ |
| **Reading order detection** | ❌ | ✅ |
| **Images extraction** | ✅ (embedded) | ✅ (with context) |
| **Images → text (OCR)** | ❌ | ✅ |
| **EPUB** | ✅ | ✅ |
| **Markdown output** | ✅ (via pymupdf4llm) | ✅ (native, higher quality) |
| **Install size** | ~25MB | ~3-5GB (PyTorch + models) |
| **Speed** | Instant | ~1-14s/page (CPU), ~0.2s/page (GPU) |
**Decision**: Use pymupdf unless you need OCR, equations, forms, or complex layout analysis.
If the user needs marker capabilities but the system lacks ~5GB free disk:
> "This document needs OCR/advanced extraction (marker-pdf), which requires ~5GB for PyTorch and models. Your system has [X]GB free. Options: free up space, provide a URL so I can use web_extract, or I can try pymupdf which works for text-based PDFs but not scanned documents or equations."
---
## pymupdf (lightweight)
```bash
pip install pymupdf pymupdf4llm
```
**Via helper script**:
```bash
python scripts/extract_pymupdf.py document.pdf # Plain text
python scripts/extract_pymupdf.py document.pdf --markdown # Markdown
python scripts/extract_pymupdf.py document.pdf --tables # Tables
python scripts/extract_pymupdf.py document.pdf --images out/ # Extract images
python scripts/extract_pymupdf.py document.pdf --metadata # Title, author, pages
python scripts/extract_pymupdf.py document.pdf --pages 0-4 # Specific pages
```
**Inline**:
```bash
python3 -c "
import pymupdf
doc = pymupdf.open('document.pdf')
for page in doc:
print(page.get_text())
"
```
---
## marker-pdf (high-quality OCR)
```bash
# Check disk space first
python scripts/extract_marker.py --check
pip install marker-pdf
```
**Via helper script**:
```bash
python scripts/extract_marker.py document.pdf # Markdown
python scripts/extract_marker.py document.pdf --json # JSON with metadata
python scripts/extract_marker.py document.pdf --output_dir out/ # Save images
python scripts/extract_marker.py scanned.pdf # Scanned PDF (OCR)
python scripts/extract_marker.py document.pdf --use_llm # LLM-boosted accuracy
```
**CLI** (installed with marker-pdf):
```bash
marker_single document.pdf --output_dir ./output
marker /path/to/folder --workers 4 # Batch
```
---
## Arxiv Papers
```
# Abstract only (fast)
web_extract(urls=["https://arxiv.org/abs/2402.03300"])
# Full paper
web_extract(urls=["https://arxiv.org/pdf/2402.03300"])
# Search
web_search(query="arxiv GRPO reinforcement learning 2026")
```
## Split, Merge & Search
pymupdf handles these natively — use `execute_code` or inline Python:
```python
# Split: extract pages 1-5 to a new PDF
import pymupdf
doc = pymupdf.open("report.pdf")
new = pymupdf.open()
for i in range(5):
new.insert_pdf(doc, from_page=i, to_page=i)
new.save("pages_1-5.pdf")
```
```python
# Merge multiple PDFs
import pymupdf
result = pymupdf.open()
for path in ["a.pdf", "b.pdf", "c.pdf"]:
result.insert_pdf(pymupdf.open(path))
result.save("merged.pdf")
```
```python
# Search for text across all pages
import pymupdf
doc = pymupdf.open("report.pdf")
for i, page in enumerate(doc):
results = page.search_for("revenue")
if results:
print(f"Page {i+1}: {len(results)} match(es)")
print(page.get_text("text"))
```
No extra dependencies needed — pymupdf covers split, merge, search, and text extraction in one package.
---
## Notes
- `web_extract` is always first choice for URLs
- pymupdf is the safe default — instant, no models, works everywhere
- marker-pdf is for OCR, scanned docs, equations, complex layouts — install only when needed
- Both helper scripts accept `--help` for full usage
- marker-pdf downloads ~2.5GB of models to `~/.cache/huggingface/` on first use
- For Word docs: `pip install python-docx` (better than OCR — parses actual structure)
- For PowerPoint: see the `powerpoint` skill (uses python-pptx)
Related in Writing & Docs
jax-development
IncludedUse this skill when the user is writing, debugging, profiling, refactoring, reviewing, benchmarking, parallelising, exporting, or explaining JAX code, or when they mention JAX, jax.numpy, jit, grad, value_and_grad, vmap, scan, lax, random keys, pytrees, jax.Array, sharding, Mesh, PartitionSpec, NamedSharding, pmap, shard_map, Pallas, XLA, StableHLO, checkify, profiler, or the JAX repo. It helps turn NumPy or PyTorch-style code into pure functional JAX, fix tracer/control-flow/shape/PRNG bugs, remove recompiles and host-device syncs, choose transforms and sharding strategies, inspect jaxpr/lowering/IR, and benchmark compiled code correctly.
nature-article-writer
IncludedDrafts, rewrites, diagnostically critiques, and style-calibrates primary research manuscripts for Nature and Nature Portfolio journals. Use when the user wants a Nature-style title, summary paragraph or abstract, introduction, results, discussion, methods, figure legends, presubmission enquiry, cover letter, reviewer response, or when a scientific draft sounds generic, jargon-heavy, structurally weak, or AI-ish and needs precise, broad-reader-friendly prose without inventing data, analyses, or references. Best for primary research articles and letters rather than reviews or press releases unless explicitly adapting one.
deckrd
IncludedDocument-driven framework that derives requirements, specifications, implementation plans, and executable tasks from goals through structured AI dialogue. Use when user says "write requirements", "create spec", "plan implementation", "derive tasks", "structure this feature", "break down into tasks", or "document this module". Also use for reverse engineering existing code into docs (/deckrd rev). Do NOT use for direct code writing — use /deckrd-coder after tasks are generated. Do NOT use when the user only wants to run or fix existing code without planning.
clinical-decision-support
IncludedGenerate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
handling-sf-data
IncludedSalesforce data operations with 130-point scoring. Use this skill to create, update, delete, bulk import/export, generate test data, and clean up org records using sf CLI and anonymous Apex. TRIGGER when: user creates test data, performs bulk import/export, uses sf data CLI commands, needs data factory patterns for Apex tests, or needs to seed/clean records in a Salesforce org. DO NOT TRIGGER when: SOQL query writing only (use querying-soql), Apex test execution (use running-apex-tests), or metadata deployment (use deploying-metadata).
accelint-ac-to-playwright
IncludedConvert and validate acceptance criteria for Playwright test automation. Use when user asks to (1) review/evaluate/check if AC are ready for automation, (2) assess if AC can be converted as-is, (3) validate AC quality for Playwright, (4) turn AC into tests, (5) generate tests from acceptance criteria, (6) convert .md bullets or .feature Gherkin files to Playwright specs, (7) create test automation from requirements. Handles both bullet-style markdown and Gherkin syntax with JSON test plan generation and validation.