org-deps
Audit cross-repo dependencies within an org and flag outdated or breaking changes
What this skill does
# Cross-Repo Dependency Audit
Check how packages in an org depend on each other and flag version mismatches.
Run from `~/code/{org}/` or pass the org name as an argument.
Can also run across multiple orgs (e.g. `/org-deps epinowcast epiforecasts`).
## Helper script
A pre-built script at `~/.claude/scripts/org-deps.sh` collects all dependency info in one pass.
Run it first to avoid spending tokens on file parsing.
```bash
~/.claude/scripts/org-deps.sh <org-name> [org-name2 ...] > /tmp/org-deps.json
```
If the script is missing or not executable, flag this to the user and stop.
The script outputs a JSON array with per-repo entries containing:
- `repo`, `org`, `gh_org`, `type`, `version`, `latest_release_tag`
- `dependencies` object with R fields (`depends`, `imports`, `suggests`, `remotes`) or Julia fields (`julia_deps`, `julia_compat`)
## Phase 1: Build dependency graph
From the script output, build a graph of which local packages depend on which other local packages.
## Phase 2: Check for issues
### Version mismatches
- Package A requires `primarycensored >= 1.0` but local copy is on `0.9.5`
- `Remotes` pointing to branches that no longer exist
- `[compat]` bounds that exclude the latest release
### Breaking changes
For each dependency edge, check if the upstream package has commits since the version pinned downstream that include:
- Breaking changes (search NEWS.md for "breaking", "removed", "deprecated")
- API changes (renamed exports, changed function signatures)
### Stale pins
Downstream packages pinning old versions when newer ones are available on CRAN or in the org.
## Phase 3: Report
Present:
1. Dependency graph (text format showing who depends on whom)
2. Table of issues found with severity (breaking/outdated/info)
3. Suggested fixes
## Phase 4: Fix (with confirmation)
For each confirmed fix:
1. Create a worktree branch
2. Update version constraints
3. Run tests to verify compatibility
4. Create a PR
## Auto-Exit When Standalone
**IMPORTANT**: If this command is being run as a standalone request, automatically exit after completing all phases successfully.
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