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qiime2-microbiome-analyzer

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$97 forever

QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis

General

What this skill does


# QIIME2 Microbiome Analyzer Skill

## Purpose
Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.

## Capabilities
- Demultiplexing and denoising (DADA2)
- Taxonomic classification
- Alpha diversity metrics
- Beta diversity analysis
- Differential abundance testing
- Phylogenetic analysis

## Usage Guidelines
- Use DADA2 for denoising amplicon data
- Select appropriate taxonomic classifier
- Calculate diversity metrics with rarefaction
- Visualize beta diversity with ordination
- Test differential abundance appropriately
- Document pipeline parameters

## Dependencies
- QIIME2
- DADA2
- phyloseq

## Process Integration
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)

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