ucsc-genome-browser-querier

Included with Lifetime

$97 forever

UCSC Genome Browser query skill for genome annotation retrieval and track data access

General

What this skill does


# UCSC Genome Browser Querier Skill

## Purpose
Provide UCSC Genome Browser queries for genome annotation retrieval and track data access.

## Capabilities
- Track data retrieval
- Custom track upload
- Genome annotation queries
- Conservation score extraction
- Table browser queries
- bigWig/bigBed handling

## Usage Guidelines
- Query relevant annotation tracks
- Upload custom data for visualization
- Extract conservation scores for analysis
- Use Table Browser for data extraction
- Handle bigWig/bigBed formats efficiently
- Document genome assembly versions

## Dependencies
- UCSC API
- kent utilities
- pyBigWig

## Process Integration
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)

Files: 1

Size: 1.1 KB

Complexity: 8/100

Category: General

Source: https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/ucsc-genome-browser-querier

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